IL_6TH6_171

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UCUAC*GGCAG

Length

10 nucleotides

Bulged bases

6TH6|1|BA|U|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_171 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.1673

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6TH6|1|BA|U|2792
6TH6|1|BA|C|2793
6TH6|1|BA|U|2794
6TH6|1|BA|A|2795
6TH6|1|BA|C|2796
*
6TH6|1|BA|G|2821
6TH6|1|BA|G|2822
6TH6|1|BA|C|2823
6TH6|1|BA|A|2824
6TH6|1|BA|G|2825

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BY

50S ribosomal protein L24e

Chain Bc

50S ribosomal protein L31e