IL_6TH6_176

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGUAAG*UUCAG

Length

11 nucleotides

Bulged bases

6TH6|1|BA|C|3001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_176 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.1122

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

6TH6|1|BA|U|2973
6TH6|1|BA|G|2974
6TH6|1|BA|U|2975
6TH6|1|BA|A|2976
6TH6|1|BA|A|2977
6TH6|1|BA|G|2978
*
6TH6|1|BA|U|2999
6TH6|1|BA|U|3000
6TH6|1|BA|C|3001
6TH6|1|BA|A|3002
6TH6|1|BA|G|3003

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BY

50S ribosomal protein L24e