IL_6TH6_190

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UGAAC*GGAUGUG

Length

12 nucleotides

Bulged bases

6TH6|1|BA|U|293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_190 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.1028

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

6TH6|1|BA|U|265
6TH6|1|BA|G|266
6TH6|1|BA|A|267
6TH6|1|BA|A|268
6TH6|1|BA|C|269
*
6TH6|1|BA|G|290
6TH6|1|BA|G|291
6TH6|1|BA|A|292
6TH6|1|BA|U|293
6TH6|1|BA|G|294
6TH6|1|BA|U|295
6TH6|1|BA|G|296

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L7Ae

Chain BP

50S ribosomal protein L15e