IL_6TH6_202

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

G(OMC)*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_202 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1303

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

6TH6|1|BA|G|2046
6TH6|1|BA|OMC|2047
*
6TH6|1|BA|G|2077
6TH6|1|BA|C|2078
6TH6|1|BA|A|2079
6TH6|1|BA|U|2080

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Bk

LSU ribosomal protein L41E