IL_6TH6_215

3D structure

PDB id

6TH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TH6_215 not in the Motif Atlas

Geometric match to IL_8P9A_298

Geometric discrepancy: 0.3644

The information below is about IL_8P9A_298

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6TH6|1|BA|C|1495
6TH6|1|BA|C|1496
*
6TH6|1|BA|G|1506
6TH6|1|BA|C|1507
6TH6|1|BA|G|1508

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e