IL_6TNN_008

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_008 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0923

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6TNN|1|U|C|239
6TNN|1|U|U|240
6TNN|1|U|G|241
6TNN|1|U|A|242
6TNN|1|U|G|243
6TNN|1|U|U|244
6TNN|1|U|A|245
6TNN|1|U|G|246
*
6TNN|1|U|C|254
6TNN|1|U|G|255
6TNN|1|U|A|256
6TNN|1|U|A|257
6TNN|1|U|A|258
6TNN|1|U|C|259
6TNN|1|U|G|260

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain s

50S ribosomal protein L35