IL_6TNN_043

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6TNN|1|U|A|1132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_043 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3559

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6TNN|1|U|G|1131
6TNN|1|U|A|1132
6TNN|1|U|G|1133
6TNN|1|U|U|1134
6TNN|1|U|G|1135
*
6TNN|1|U|C|1144
6TNN|1|U|U|1145
6TNN|1|U|C|1146

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain t

50S ribosomal protein L36