IL_6TNN_047

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

6TNN|1|U|A|1258

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_047 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.2055

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6TNN|1|U|G|1257
6TNN|1|U|A|1258
6TNN|1|U|C|1259
*
6TNN|1|U|G|1266
6TNN|1|U|A|1267
6TNN|1|U|C|1268

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain j

50S ribosomal protein L20

Chain k

50S ribosomal protein L21