IL_6TNN_048
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TNN_048 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.0877
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
6TNN|1|U|A|1300
6TNN|1|U|U|1301
6TNN|1|U|G|1302
6TNN|1|U|A|1303
6TNN|1|U|G|1304
6TNN|1|U|U|1305
6TNN|1|U|A|1306
6TNN|1|U|G|1307
*
6TNN|1|U|U|2038
6TNN|1|U|G|2039
6TNN|1|U|A|2040
6TNN|1|U|A|2041
6TNN|1|U|A|2042
6TNN|1|U|U|2043
6TNN|1|U|U|2044
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
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