IL_6TNN_058

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_058 not in the Motif Atlas

Geometric match to IL_5MWI_006

Geometric discrepancy: 0.1762

The information below is about IL_5MWI_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6TNN|1|U|G|1486
6TNN|1|U|U|1487
6TNN|1|U|A|1488
*
6TNN|1|U|U|1593
6TNN|1|U|U|1594
6TNN|1|U|C|1595

Current chains

Chain U

pre-23S rRNA

Nearby chains