IL_6TNN_068

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6TNN|1|U|G|1742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_068 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1264

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6TNN|1|U|C|1729
6TNN|1|U|G|1730
6TNN|1|U|U|1731
6TNN|1|U|A|1732
6TNN|1|U|A|1733
6TNN|1|U|C|1734
*
6TNN|1|U|G|1739
6TNN|1|U|G|1740
6TNN|1|U|A|1741
6TNN|1|U|G|1742
6TNN|1|U|A|1743
6TNN|1|U|A|1744
6TNN|1|U|G|1745

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2