IL_6TNN_070

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

6TNN|1|U|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_070 not in the Motif Atlas

Homologous match to IL_5J7L_312

Geometric discrepancy: 0.2837

The information below is about IL_5J7L_312

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6TNN|1|U|G|1797
6TNN|1|U|C|1798
*
6TNN|1|U|G|2007
6TNN|1|U|A|2008
6TNN|1|U|U|2009

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2