IL_6TNN_117
3D structure
- PDB id
- 6TNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TNN_117 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1458
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6TNN|1|V|C|74
6TNN|1|V|G|75
6TNN|1|V|A|76
6TNN|1|V|U|77
6TNN|1|V|G|78
6TNN|1|V|G|79
6TNN|1|V|U|80
6TNN|1|V|A|81
6TNN|1|V|G|82
*
6TNN|1|V|U|100
6TNN|1|V|G|101
6TNN|1|V|A|102
6TNN|1|V|G|103
6TNN|1|V|A|104
6TNN|1|V|G|105
6TNN|1|V|U|106
6TNN|1|V|A|107
6TNN|1|V|G|108
Current chains
- Chain V
- 5S rRNA
Nearby chains
- Chain U
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L16
- Chain o
- 50S ribosomal protein L27
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