IL_6TNN_120

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUU*AAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNN_120 not in the Motif Atlas

Homologous match to IL_7A0S_026

Geometric discrepancy: 0.5595

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6TNN|1|U|C|897
6TNN|1|U|U|898
6TNN|1|U|U|899
*
6TNN|1|U|A|968
6TNN|1|U|A|969
6TNN|1|U|U|970
6TNN|1|U|G|971

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain o

50S ribosomal protein L27

Chain w

50S ribosomal protein L30