IL_6TNU_045

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6TNU|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_045 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2844

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6TNU|1|2|U|893
6TNU|1|2|U|894
6TNU|1|2|G|895
6TNU|1|2|U|896
6TNU|1|2|C|897
6TNU|1|2|A|898
6TNU|1|2|G|899
*
6TNU|1|2|C|910
6TNU|1|2|U|911
6TNU|1|2|U|912
6TNU|1|2|G|913
6TNU|1|2|G|914
6TNU|1|2|A|915
6TNU|1|2|U|916
6TNU|1|2|U|917
6TNU|1|2|U|918
6TNU|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B