IL_6TNU_074

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_074 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.177

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TNU|1|2|G|1540
6TNU|1|2|G|1541
6TNU|1|2|G|1542
6TNU|1|2|A|1543
6TNU|1|2|U|1544
6TNU|1|2|A|1545
*
6TNU|1|2|U|1566
6TNU|1|2|U|1567
6TNU|1|2|C|1568
6TNU|1|2|A|1569
6TNU|1|2|A|1570
6TNU|1|2|C|1571

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain K

40S ribosomal protein S25-A