IL_6TNU_107

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

6TNU|1|BQ|A|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TNU|1|BQ|C|435
6TNU|1|BQ|A|436
6TNU|1|BQ|G|437
6TNU|1|BQ|A|438
6TNU|1|BQ|C|439
6TNU|1|BQ|A|440
6TNU|1|BQ|U|441
6TNU|1|BQ|G|442
6TNU|1|BQ|G|443
6TNU|1|BQ|U|444
6TNU|1|BQ|G|445
6TNU|1|BQ|U|446
6TNU|1|BQ|U|447
6TNU|1|BQ|U|448
6TNU|1|BQ|U|449
6TNU|1|BQ|G|450
6TNU|1|BQ|U|451
6TNU|1|BQ|A|486
6TNU|1|BQ|U|487
6TNU|1|BQ|U|488
6TNU|1|BQ|U|489
6TNU|1|BQ|C|490
6TNU|1|BQ|A|491
6TNU|1|BQ|C|492
6TNU|1|BQ|U|493
6TNU|1|BQ|G|494
6TNU|1|BQ|G|495
*
6TNU|1|BQ|C|618
6TNU|1|BQ|A|619
6TNU|1|BQ|U|620
6TNU|1|BQ|A|621
6TNU|1|BQ|A|622
6TNU|1|BQ|U|623
6TNU|1|BQ|G|624

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BG

60S ribosomal protein L32

Chain BK

60S ribosomal protein L33-A

Chain BM

60S ribosomal protein L6-B