IL_6TNU_116

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_116 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1603

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6TNU|1|BQ|C|758
6TNU|1|BQ|U|759
6TNU|1|BQ|G|760
6TNU|1|BQ|A|761
6TNU|1|BQ|U|762
6TNU|1|BQ|G|763
*
6TNU|1|BQ|C|768
6TNU|1|BQ|G|769
6TNU|1|BQ|G|770
6TNU|1|BQ|A|771
6TNU|1|BQ|U|772
6TNU|1|BQ|G|773

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28