IL_6TNU_133

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

6TNU|1|BQ|C|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_133 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3918

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6TNU|1|BQ|U|1014
6TNU|1|BQ|U|1015
6TNU|1|BQ|C|1016
6TNU|1|BQ|C|1017
6TNU|1|BQ|G|1018
*
6TNU|1|BQ|U|1034
6TNU|1|BQ|G|1035
6TNU|1|BQ|A|1036

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain BD

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA