IL_6TNU_151

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

6TNU|1|BQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_151 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.1056

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6TNU|1|BQ|G|1500
6TNU|1|BQ|U|1501
6TNU|1|BQ|C|1502
6TNU|1|BQ|A|1503
6TNU|1|BQ|A|1504
6TNU|1|BQ|C|1505
*
6TNU|1|BQ|G|1513
6TNU|1|BQ|G|1514
6TNU|1|BQ|A|1515
6TNU|1|BQ|C|1516

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A