IL_6TNU_194

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_194 not in the Motif Atlas

Homologous match to IL_5TBW_104

Geometric discrepancy: 0.0989

The information below is about IL_5TBW_104

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6TNU|1|BQ|U|2826
6TNU|1|BQ|U|2827
6TNU|1|BQ|G|2828
*
6TNU|1|BQ|U|2862
6TNU|1|BQ|G|2863

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain m

Transfer RNA; tRNA