IL_6TNU_211

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_211 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2024

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6TNU|1|BQ|G|3158
6TNU|1|BQ|C|3159
*
6TNU|1|BQ|G|3291
6TNU|1|BQ|A|3292
6TNU|1|BQ|U|3293

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L3