IL_6TNU_216

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6TNU|1|BQ|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_216 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.1848

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6TNU|1|BQ|C|3193
6TNU|1|BQ|C|3194
*
6TNU|1|BQ|G|3197
6TNU|1|BQ|U|3198
6TNU|1|BQ|G|3199

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AM

60S ribosomal protein L14-A

Chain AU

60S ribosomal protein L16-A