IL_6TNU_238

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_238 not in the Motif Atlas

Homologous match to IL_5IBB_340

Geometric discrepancy: 0.446

The information below is about IL_5IBB_340

Detailed Annotation

Single base bend

Broad Annotation

Single base bend

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6TNU|1|m|A|51
6TNU|1|m|G|52
6TNU|1|m|G|53
*
6TNU|1|m|C|62
6TNU|1|m|U|63

Current chains

Chain m

A-site tRNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BQ

Large subunit ribosomal RNA; LSU rRNA