IL_6TNU_246

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TNU_246 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0924

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

6TNU|1|BQ|G|1898
6TNU|1|BQ|G|1899
6TNU|1|BQ|A|1900
6TNU|1|BQ|A|1901
6TNU|1|BQ|G|1902
6TNU|1|BQ|U|1903
6TNU|1|BQ|C|1904
6TNU|1|BQ|G|1905
6TNU|1|BQ|G|1906
*
6TNU|1|BQ|C|2333
6TNU|1|BQ|U|2334
6TNU|1|BQ|G|2335
6TNU|1|BQ|U|2336
6TNU|1|BQ|C|2337

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain BA

60S ribosomal protein L3