IL_6TNU_251
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TNU_251 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.1023
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6TNU|1|BQ|C|2889
6TNU|1|BQ|A|2890
6TNU|1|BQ|U|2891
6TNU|1|BQ|A|2892
*
6TNU|1|BQ|U|2909
6TNU|1|BQ|A|2910
6TNU|1|BQ|A|2911
6TNU|1|BQ|G|2912
6TNU|1|BQ|C|2913
6TNU|1|BQ|G|2914
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain AD
- 60S ribosomal protein L9-A
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain AU
- 60S ribosomal protein L16-A
- Chain BA
- 60S ribosomal protein L3
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