IL_6TPH_009

3D structure

PDB id

6TPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a protein-RNA complex by ssNMR

Experimental method

SOLID-STATE NMR

Resolution

Loop

Sequence

CUGAG*CAAUGAUG

Length

13 nucleotides

Bulged bases

6TPH|9|B|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPH_009 not in the Motif Atlas

Geometric match to IL_3NMU_004

Geometric discrepancy: 0.1346

The information below is about IL_3NMU_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_69229.3

Basepair signature

cWW-L-tSH-L-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6TPH|9|B|C|2
6TPH|9|B|U|3
6TPH|9|B|G|4
6TPH|9|B|A|5
6TPH|9|B|G|6
*
6TPH|9|B|C|17
6TPH|9|B|A|18
6TPH|9|B|A|19
6TPH|9|B|U|20
6TPH|9|B|G|21
6TPH|9|B|A|22
6TPH|9|B|U|23
6TPH|9|B|G|24

Current chains

Chain B

RNA (26-MER)

Nearby chains

Chain A

50S ribosomal protein L7Ae