IL_6TPQ_004
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6TPQ|1|U|U|98
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.1527
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
6TPQ|1|U|G|79
6TPQ|1|U|G|80
6TPQ|1|U|G|81
6TPQ|1|U|A|82
6TPQ|1|U|G|83
*
6TPQ|1|U|C|95
6TPQ|1|U|U|96
6TPQ|1|U|U|97
6TPQ|1|U|U|98
6TPQ|1|U|G|99
6TPQ|1|U|A|100
6TPQ|1|U|U|101
6TPQ|1|U|C|102
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain n
- 50S ribosomal protein L24
- Chain v
- 50S ribosomal protein L29
Coloring options: