IL_6TPQ_008
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CUGAGUAG*CGAAACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_008 not in the Motif Atlas
- Homologous match to IL_4WF9_009
- Geometric discrepancy: 0.0911
- The information below is about IL_4WF9_009
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.1
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
6TPQ|1|U|C|239
6TPQ|1|U|U|240
6TPQ|1|U|G|241
6TPQ|1|U|A|242
6TPQ|1|U|G|243
6TPQ|1|U|U|244
6TPQ|1|U|A|245
6TPQ|1|U|G|246
*
6TPQ|1|U|C|254
6TPQ|1|U|G|255
6TPQ|1|U|A|256
6TPQ|1|U|A|257
6TPQ|1|U|A|258
6TPQ|1|U|C|259
6TPQ|1|U|G|260
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L15
- Chain s
- 50S ribosomal protein L35
Coloring options: