IL_6TPQ_029
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_029 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.083
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.1
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6TPQ|1|U|G|901
6TPQ|1|U|A|902
6TPQ|1|U|G|903
6TPQ|1|U|G|904
6TPQ|1|U|U|905
6TPQ|1|U|A|906
6TPQ|1|U|G|907
*
6TPQ|1|U|C|960
6TPQ|1|U|G|961
6TPQ|1|U|A|962
6TPQ|1|U|A|963
6TPQ|1|U|U|964
6TPQ|1|U|G|965
6TPQ|1|U|C|966
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain f
- 50S ribosomal protein L16
- Chain o
- 50S ribosomal protein L27
- Chain w
- 50S ribosomal protein L30
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