IL_6TPQ_038

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6TPQ|1|U|U|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_038 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.0987

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6TPQ|1|U|G|1055
6TPQ|1|U|U|1056
6TPQ|1|U|A|1057
*
6TPQ|1|U|U|1193
6TPQ|1|U|C|1194

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain j

50S ribosomal protein L20