IL_6TPQ_039
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UUAAGUG*CUAAA
- Length
- 12 nucleotides
- Bulged bases
- 6TPQ|1|U|A|1187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_039 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.1065
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
6TPQ|1|U|U|1062
6TPQ|1|U|U|1063
6TPQ|1|U|A|1064
6TPQ|1|U|A|1065
6TPQ|1|U|G|1066
6TPQ|1|U|U|1067
6TPQ|1|U|G|1068
*
6TPQ|1|U|C|1184
6TPQ|1|U|U|1185
6TPQ|1|U|A|1186
6TPQ|1|U|A|1187
6TPQ|1|U|A|1188
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain a
- 50S ribosomal protein L6
- Chain c
- 50S ribosomal protein L13
- Chain t
- 50S ribosomal protein L36
Coloring options: