IL_6TPQ_045

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6TPQ|1|U|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_045 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1068

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6TPQ|1|U|C|1235
6TPQ|1|U|G|1236
6TPQ|1|U|U|1237
*
6TPQ|1|U|A|1285
6TPQ|1|U|G|1286
6TPQ|1|U|U|1287
6TPQ|1|U|G|1288

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain e

50S ribosomal protein L15

Chain j

50S ribosomal protein L20