IL_6TPQ_052

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_052 not in the Motif Atlas

Homologous match to IL_4WF9_051

Geometric discrepancy: 0.1146

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6TPQ|1|U|C|1388
6TPQ|1|U|U|1389
6TPQ|1|U|A|1390
6TPQ|1|U|A|1391
6TPQ|1|U|G|1392
*
6TPQ|1|U|C|1413
6TPQ|1|U|G|1414
6TPQ|1|U|A|1415
6TPQ|1|U|U|1416
6TPQ|1|U|G|1417

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2

Chain r

50S ribosomal protein L34