IL_6TPQ_057

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGAG*CACAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TPQ|1|U|G|1476
6TPQ|1|U|G|1477
6TPQ|1|U|A|1478
6TPQ|1|U|G|1479
*
6TPQ|1|U|C|1603
6TPQ|1|U|A|1604
6TPQ|1|U|C|1605
6TPQ|1|U|A|1606
6TPQ|1|U|C|1607

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2