IL_6TPQ_062

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAGUUA*UGAGCUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TPQ|1|U|C|1517
6TPQ|1|U|A|1518
6TPQ|1|U|G|1519
6TPQ|1|U|U|1520
6TPQ|1|U|U|1521
6TPQ|1|U|A|1522
*
6TPQ|1|U|U|1558
6TPQ|1|U|G|1559
6TPQ|1|U|A|1560
6TPQ|1|U|G|1561
6TPQ|1|U|C|1562
6TPQ|1|U|U|1563
6TPQ|1|U|G|1564

Current chains

Chain U

pre-23S rRNA

Nearby chains