IL_6TPQ_072

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6TPQ|1|U|G|1742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_072 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0838

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6TPQ|1|U|C|1729
6TPQ|1|U|G|1730
6TPQ|1|U|U|1731
6TPQ|1|U|A|1732
6TPQ|1|U|A|1733
6TPQ|1|U|C|1734
*
6TPQ|1|U|G|1739
6TPQ|1|U|G|1740
6TPQ|1|U|A|1741
6TPQ|1|U|G|1742
6TPQ|1|U|A|1743
6TPQ|1|U|A|1744
6TPQ|1|U|G|1745

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2