IL_6TPQ_073

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

6TPQ|1|U|U|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_073 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1799

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6TPQ|1|U|U|1754
6TPQ|1|U|G|1755
6TPQ|1|U|U|1756
6TPQ|1|U|U|1757
6TPQ|1|U|A|1758
6TPQ|1|U|G|1759
*
6TPQ|1|U|C|1770
6TPQ|1|U|G|1771
6TPQ|1|U|A|1772
6TPQ|1|U|G|1773
6TPQ|1|U|A|1774

Current chains

Chain U

pre-23S rRNA

Nearby chains