IL_6TPQ_085

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6TPQ|1|U|C|2082, 6TPQ|1|U|U|2640, 6TPQ|1|U|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_085 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1241

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6TPQ|1|U|A|2081
6TPQ|1|U|C|2082
6TPQ|1|U|G|2083
*
6TPQ|1|U|C|2639
6TPQ|1|U|U|2640
6TPQ|1|U|A|2641
6TPQ|1|U|U|2642

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain l

50S ribosomal protein L22

Chain p

50S ribosomal protein L32