IL_6TPQ_092

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GUACAGG*CGGUGGGAUACUACCC

Length

23 nucleotides

Bulged bases

6TPQ|1|U|U|2138, 6TPQ|1|U|G|2192, 6TPQ|1|U|U|2199

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TPQ|1|U|G|2137
6TPQ|1|U|U|2138
6TPQ|1|U|A|2139
6TPQ|1|U|C|2140
6TPQ|1|U|A|2141
6TPQ|1|U|G|2142
6TPQ|1|U|G|2143
*
6TPQ|1|U|C|2191
6TPQ|1|U|G|2192
6TPQ|1|U|G|2193
6TPQ|1|U|U|2194
6TPQ|1|U|G|2195
6TPQ|1|U|G|2196
6TPQ|1|U|G|2197
6TPQ|1|U|A|2198
6TPQ|1|U|U|2199
6TPQ|1|U|A|2200
6TPQ|1|U|C|2201
6TPQ|1|U|U|2202
6TPQ|1|U|A|2203
6TPQ|1|U|C|2204
6TPQ|1|U|C|2205
6TPQ|1|U|C|2206

Current chains

Chain U

pre-23S rRNA

Nearby chains