IL_6TPQ_098

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

6TPQ|1|U|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_098 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.3228

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6TPQ|1|U|U|2428
6TPQ|1|U|U|2429
6TPQ|1|U|C|2430
*
6TPQ|1|U|G|2441
6TPQ|1|U|G|2442

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain q

50S ribosomal protein L33 1