IL_6TPQ_101

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_101 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1167

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6TPQ|1|U|A|2486
6TPQ|1|U|U|2487
6TPQ|1|U|C|2488
*
6TPQ|1|U|G|2516
6TPQ|1|U|G|2517
6TPQ|1|U|U|2518
6TPQ|1|U|U|2519
6TPQ|1|U|U|2520

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain f

50S ribosomal protein L16