IL_6TPQ_116
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGGAAG*UGGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6TPQ_116 not in the Motif Atlas
- Homologous match to IL_4WF9_108
- Geometric discrepancy: 0.1086
- The information below is about IL_4WF9_108
- Detailed Annotation
- tHS double platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6TPQ|1|U|U|2870
6TPQ|1|U|G|2871
6TPQ|1|U|G|2872
6TPQ|1|U|A|2873
6TPQ|1|U|A|2874
6TPQ|1|U|G|2875
*
6TPQ|1|U|U|2888
6TPQ|1|U|G|2889
6TPQ|1|U|G|2890
6TPQ|1|U|A|2891
6TPQ|1|U|G|2892
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain g
- 50S ribosomal protein L17
- Chain i
- 50S ribosomal protein L19
Coloring options: