IL_6TPQ_122

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

UCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_122 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.2012

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6TPQ|1|V|U|78
6TPQ|1|V|C|79
6TPQ|1|V|G|80
*
6TPQ|1|V|C|92
6TPQ|1|V|U|93
6TPQ|1|V|G|94

Current chains

Chain V

pre-5S rRNA

Nearby chains

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain f

50S ribosomal protein L16

Chain w

50S ribosomal protein L30