IL_6TPQ_125

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

6TPQ|1|U|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6TPQ_125 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1136

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6TPQ|1|U|G|1709
6TPQ|1|U|G|1710
6TPQ|1|U|A|1711
6TPQ|1|U|A|1712
6TPQ|1|U|C|1713
6TPQ|1|U|U|1714
6TPQ|1|U|C|1715
6TPQ|1|U|G|1716
6TPQ|1|U|G|1717
*
6TPQ|1|U|C|2017
6TPQ|1|U|U|2018
6TPQ|1|U|G|2019
6TPQ|1|U|U|2020
6TPQ|1|U|C|2021

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain d

50S ribosomal protein L14