IL_6U7Z_004

3D structure

PDB id

6U7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA hairpin structure containing one TNA nucleotide as primer

Experimental method

X-RAY DIFFRACTION

Resolution

2.71 Å

Loop

Sequence

AG*UAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6U7Z_004 not in the Motif Atlas

Geometric match to IL_5VCI_004

Geometric discrepancy: 0.0716

The information below is about IL_5VCI_004

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_43434.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

6U7Z|1|A|A|11
6U7Z|1|A|G|12
*
6U7Z|1|B|U|2
6U7Z|1|B|A|3
6U7Z|1|B|U|4

Current chains

Chain A

RNA (5'-R(*CP*UP*GP*CP*UP*GP*GP*CP*UP*AP*AP*GP*GP*GP*CP*CP*GP*AP*AP*AP*GP*(TG))-3')

Chain B

RNA (5'-R(*CP*UP*AP*UP*GP*CP*CP*UP*GP*CP*UP*G)-3')

Nearby chains