IL_6UCQ_231

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6UCQ|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_231 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.0946

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

6UCQ|1|2A|A|1669
6UCQ|1|2A|C|1670
6UCQ|1|2A|U|1671
6UCQ|1|2A|C|1672
6UCQ|1|2A|U|1673
6UCQ|1|2A|G|1674
*
6UCQ|1|2A|C|1990
6UCQ|1|2A|U|1991
6UCQ|1|2A|G|1992
6UCQ|1|2A|U|1993

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14