IL_6UCQ_312

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_312 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1129

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6UCQ|1|2a|C|779
6UCQ|1|2a|A|780
6UCQ|1|2a|A|781
6UCQ|1|2a|A|782
6UCQ|1|2a|C|783
*
6UCQ|1|2a|G|799
6UCQ|1|2a|G|800
6UCQ|1|2a|U|801
6UCQ|1|2a|A|802
6UCQ|1|2a|G|803

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11