IL_6UCQ_333

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UCQ_333 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5864

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6UCQ|1|2a|G|1401
6UCQ|1|2a|4OC|1402
6UCQ|1|2a|C|1403
6UCQ|1|2a|5MC|1404
6UCQ|1|2a|G|1405
*
6UCQ|1|2a|C|1496
6UCQ|1|2a|G|1497
6UCQ|1|2a|UR3|1498
6UCQ|1|2a|A|1499
6UCQ|1|2a|A|1500
6UCQ|1|2a|C|1501

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2x

Transfer RNA; tRNA

Chain 2z

mRNA