IL_6UO1_056

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_056 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0848

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6UO1|1|1A|A|1469
6UO1|1|1A|G|1470
6UO1|1|1A|A|1471
6UO1|1|1A|A|1472
6UO1|1|1A|G|1473
*
6UO1|1|1A|U|1518
6UO1|1|1A|G|1519
6UO1|1|1A|G|1520
6UO1|1|1A|U|1523

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains